Commit 67a445d2 authored by Dominik Brilhaus's avatar Dominik Brilhaus
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update README (and test commit)

parent dcac6013
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# ARC mininmal Example RNASeq
This is a minimal Example ARC packaging an mRNA-Seq dataset with metadata and computations.
## Notes
- CWL not yet implemented
## Notes and ToDos
### isa.assay
### Experimental metadata in isa.assay.xlsx
- split GEO SWATE templates into four sheets
- 1SPL01_plants
- 2EXT01_RNA
......@@ -15,16 +13,19 @@
- 4COM01_RNASeq
### adding big data via git lfs
### Adding large raw data via git lfs
1. Before addind the files to the ARC, track them via `git lfs`
```
git lfs track "*.fastq.gz"
git lfs track "01_kallisto_index"
```
add big data files to respective folder
2. Move / add the large data files to the respective folders
3. Add them via `git add`
```
git add assays/Talinum_RNASeq_minimal/dataset/
......@@ -32,4 +33,8 @@ git add runs/run1/01_kallisto_index
```
4. Commit
## To Do's
- CWL not yet implemented
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